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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5924188_5924547_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5924188 - 5924547
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTACCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTCTAACAACT
Flanking Amino Acid:
TLACLTAIIQLCLGFVQFGF
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
34.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
67.5
0.39
0.8
59.4
36.8
Minor 5ss
33.6
-1.9
3.7
48.1
42
Minor BPS
48
-0
2
76.16
39.6

Associated Gene:

Gene:
SLC26A9
Ensembl Gene ID:
ENSAPLG00000012289
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012827
5921982 - 5934959
12978