About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5925439_5925825_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5925439 - 5925825
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
TCTGTATGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTCTGCTTACCG
Flanking Amino Acid:
RMPIPMEIIIVIVATAISGS
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.3
65
41.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74.1
0.54
1
65.7
44.5
Minor 5ss
33.6
-1.9
3.2
40.7
40.1
Minor BPS
55.6
0.04
2.2
66.7
47.1

Associated Gene:

Gene:
SLC26A9
Ensembl Gene ID:
ENSAPLG00000012289
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012827
5921982 - 5934959
12978