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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5927641_5927925_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5927641 - 5927925
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACGA
5'SS Class:
major
3'SS Sequence:
CCTCTCCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCGAAA
U12 Branch Point Sequence:
GCAGCGCTGACA
Flanking Amino Acid:
LGIYLEPLPKSVLGALIAVN
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
62.6
43.8
Major BPS
49.1
-0
1.4
57.8
37.4
Major PPT
77.2
0.61
0.7
68.6
31.7
Minor 5ss
36.9
-1.5
3.1
48.7
46.8
Minor BPS
40.8
-0.7
2.3
48.36
42

Associated Gene:

Gene:
SLC26A9
Ensembl Gene ID:
ENSAPLG00000012289
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012827
5921982 - 5934959
12978