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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5930083_5930761_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5930083 - 5930761
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
ATTTTTCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TCCACTCTAATT
Flanking Amino Acid:
SVLVVVFHTQFRNGSALGQV
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
81.7
31.1
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
85
0.79
0.8
77.7
36.1
Minor 5ss
38.8
-1.3
3
57.3
41.2
Minor BPS
53.1
0.18
1.7
68.73
42.8

Associated Gene:

Gene:
SLC26A9
Ensembl Gene ID:
ENSAPLG00000012289
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012827
5921982 - 5934959
12978