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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5930832_5931066_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5930832 - 5931066

Intron Length:

235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

GTCTCTGTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTGAG

U12 Branch Point Sequence:

CGGGTTTGAGTT

Flanking Amino Acid:

IYKNPKAYNKVHELNGIKIV

Intron Amino Acid Position:

567

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

38.6

Major BPS

54.7

0.12

1.7

57.1

49.4

Major PPT

78.4

0.64

0.9

72.4

37.7

Minor 5ss

38.7

-1.3

2.8

49.1

46.7

Minor BPS

41.3

-0.5

1.6

48.07

39.7

Associated Gene:

Gene:

SLC26A9

Ensembl Gene ID:

ENSAPLG00000012289

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012827

5921982 - 5934959

12978