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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5932995_5933366_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5932995 - 5933366
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTGGTTTCATC
Flanking Amino Acid:
GIKVFLANVHAQVYNDISTG
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
80.7
31.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
86.5
0.82
0.7
84.5
23.3
Minor 5ss
38.2
-1.3
3.1
49.9
40.6
Minor BPS
47.3
-0.2
2.2
65.01
41.9

Associated Gene:

Gene:
SLC26A9
Ensembl Gene ID:
ENSAPLG00000012289
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012827
5921982 - 5934959
12978