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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5934374_5934658_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5934374 - 5934658

Intron Length:

285

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

GTGTGCCCTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTAAC

U12 Branch Point Sequence:

GCAGCCCTAACA

Flanking Amino Acid:

SSSEFRNLEEEMFGSMFRSE

Intron Amino Acid Position:

836

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

1.1

70.9

39.4

Major BPS

59.7

0.24

1.1

61.2

32.6

Major PPT

70.6

0.46

Minor 5ss

31.8

-2.1

2.6

37.6

39.7

Minor BPS

53.2

0.1

1.8

61.79

43.9

Associated Gene:

Gene:

SLC26A9

Ensembl Gene ID:

ENSAPLG00000012289

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012827

5921982 - 5934959

12978