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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5938467_5940150_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5938467 - 5940150
Intron Length:
1684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATTT
Flanking Amino Acid:
ERLELKEALRGAVKIPTVSV
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.7
0.58
1
76.3
32.2
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
65.4
0.56
1.5
80.16
36.3

Associated Gene:

Gene:
PM20D1
Ensembl Gene ID:
ENSAPLG00000012225
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044471
5938118 - 5948700
10583
ENSAPLT00000039962
5938118 - 5947286
9169
ENSAPLT00000012740
5938241 - 5948700
10460