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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5939038_5940150_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

5939038 - 5940150

Intron Length:

1113

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TATTTCCTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATTTTTTATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

1.1

73.6

37.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

75.7

0.58

76.3

32.2

Minor 5ss

28.4

-2.5

2.9

41.8

Minor BPS

65.4

0.56

1.5

80.16

36.3

Associated Gene:

Gene:

PM20D1

Ensembl Gene ID:

ENSAPLG00000012225

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026972

5938487 - 5947286

8800