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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5940238_5940802_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5940238 - 5940802
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTAAAC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCTTAACA
Flanking Amino Acid:
MAEFGRYIREVFPAVFSSKF
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.1
37
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.9
0.85
0.8
85.2
28
Minor 5ss
32.8
-2
3.1
43.4
43.8
Minor BPS
91.6
1.3
0.7
95.02
20.5

Associated Gene:

Gene:
PM20D1
Ensembl Gene ID:
ENSAPLG00000012225
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039962
5938118 - 5947286
9169
ENSAPLT00000026972
5938487 - 5947286
8800
ENSAPLT00000012740
5938241 - 5948700
10460
ENSAPLT00000044471
5938118 - 5948700
10583