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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5942142_5942948_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5942142 - 5942948
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
TGGATTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTTCCTCTGACT
Flanking Amino Acid:
FYVGIGHDEEVFGRKGAMKI
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
71.7
0.49
1
64.9
41.2
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
65
0.55
1.7
85.73
33.8

Associated Gene:

Gene:
PM20D1
Ensembl Gene ID:
ENSAPLG00000012225
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044471
5938118 - 5948700
10583
ENSAPLT00000039962
5938118 - 5947286
9169
ENSAPLT00000026972
5938487 - 5947286
8800
ENSAPLT00000012740
5938241 - 5948700
10460