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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5943083_5943508_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5943083 - 5943508
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TATCATTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTGCATTAACC
Flanking Amino Acid:
IIAGVKKPVALIAITEKGSI
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.6
0.55
1
68.6
41.5
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
67.1
0.52
1.7
76.59
39.2

Associated Gene:

Gene:
PM20D1
Ensembl Gene ID:
ENSAPLG00000012225
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039962
5938118 - 5947286
9169
ENSAPLT00000026972
5938487 - 5947286
8800
ENSAPLT00000012740
5938241 - 5948700
10460
ENSAPLT00000044471
5938118 - 5948700
10583