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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5943629_5944425_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5943629 - 5944425
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGCCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAA
Flanking Amino Acid:
SIGILAAAMARLEQNPMRNL
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.9
0.45
0.9
65.5
36.1
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
76.9
0.84
1.2
83.98
29.3

Associated Gene:

Gene:
PM20D1
Ensembl Gene ID:
ENSAPLG00000012225
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039962
5938118 - 5947286
9169
ENSAPLT00000026972
5938487 - 5947286
8800
ENSAPLT00000012740
5938241 - 5948700
10460
ENSAPLT00000044471
5938118 - 5948700
10583