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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5944502_5944732_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5944502 - 5944732
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
TTTCTCCCATTT
Flanking Amino Acid:
LMTMEHLASEFSFPLNIVMS
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
66.3
0.41
1
61
37.5
Major PPT
75.9
0.58
0.8
74.6
29.5
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
45.5
-0.2
2
70.16
40.9

Associated Gene:

Gene:
PM20D1
Ensembl Gene ID:
ENSAPLG00000012225
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012740
5938241 - 5948700
10460
ENSAPLT00000044471
5938118 - 5948700
10583
ENSAPLT00000039962
5938118 - 5947286
9169
ENSAPLT00000026972
5938487 - 5947286
8800