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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5945128_5946022_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5945128 - 5946022
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTTCA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTCTTTTATGT
Flanking Amino Acid:
AVTMFNAGIKPNVIPSSAKA
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
68.6
39.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
87.4
0.84
0.6
85.2
22.2
Minor 5ss
44.6
-0.6
2.9
59.3
45.3
Minor BPS
53.7
0.19
1.9
76.38
40.7

Associated Gene:

Gene:
PM20D1
Ensembl Gene ID:
ENSAPLG00000012225
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044471
5938118 - 5948700
10583
ENSAPLT00000039962
5938118 - 5947286
9169
ENSAPLT00000026972
5938487 - 5947286
8800
ENSAPLT00000012740
5938241 - 5948700
10460