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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5946973_5947690_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5946973 - 5947690

Intron Length:

718

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACAGCA

5'SS Class:

major

3'SS Sequence:

GTTTGTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTAAA

U12 Branch Point Sequence:

TGCCCAGTAAAC

Flanking Amino Acid:

TFPNVDSVVPGTCIGNTDSR

Intron Amino Acid Position:

438

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

1.1

68.7

36.4

Major BPS

55.1

0.13

1.2

57.3

36.3

Major PPT

85.4

0.8

0.9

76.9

42.1

Minor 5ss

36.3

-1.6

3.3

48.6

47.1

Minor BPS

43.4

-0.5

2.2

55.32

42.1

Associated Gene:

Gene:

PM20D1

Ensembl Gene ID:

ENSAPLG00000012225

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044471

5938118 - 5948700

10583

ENSAPLT00000012740

5938241 - 5948700

10460