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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5974836_5975657_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5974836 - 5975657
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AATTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
CAATACATAATT
Flanking Amino Acid:
SNHLSSFLNFGFASRFSKPK
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
66.1
0.4
1
73
31.5
Major PPT
83
0.74
0.9
74.1
40.6
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
51.4
0.12
1.8
68.31
42.1

Associated Gene:

Gene:
PTPN22
Ensembl Gene ID:
ENSAPLG00000011829
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028662
5974771 - 5992444
17674
ENSAPLT00000012347
5974771 - 5992444
17674