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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5975324_5975657_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5975324 - 5975657

Intron Length:

334

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TGATCTGTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TATTCATGATCT

Flanking Amino Acid:

SNHLSSFLNFGTSRVENTDP

Intron Amino Acid Position:

783

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

82.3

31.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

0.34

1.2

67.9

42.4

Minor 5ss

58.3

0.28

2.3

72.3

Minor BPS

55.5

0.25

79.93

41.2

Associated Gene:

Gene:

PTPN22

Ensembl Gene ID:

ENSAPLG00000011829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017699

5975269 - 5992444

17176