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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5975736_5976221_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5975736 - 5976221

Intron Length:

486

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

TTTGTATTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTATAAT

U12 Branch Point Sequence:

AATTTTGTATTT

Flanking Amino Acid:

SLKILKNVRKSICSPSSLTK

Intron Amino Acid Position:

757

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

84.6

33.2

Major BPS

70.1

0.5

1.3

72.3

40.4

Major PPT

81.9

0.72

0.8

74.4

40.4

Minor 5ss

41.9

-0.9

3.1

59.6

38.8

Minor BPS

46.3

-0.2

2.1

66.33

39.3

Associated Gene:

Gene:

PTPN22

Ensembl Gene ID:

ENSAPLG00000011829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028662

5974771 - 5992444

17674

ENSAPLT00000017699

5975269 - 5992444

17176

ENSAPLT00000012347

5974771 - 5992444

17674