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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5976253_5976894_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5976253 - 5976894
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTTTTCCAACA
Flanking Amino Acid:
EPVKCFRRSKSLKILKNVRK
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
57.2
0.22
1.8
75.85
35.3

Associated Gene:

Gene:
PTPN22
Ensembl Gene ID:
ENSAPLG00000011829
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028662
5974771 - 5992444
17674
ENSAPLT00000017699
5975269 - 5992444
17176
ENSAPLT00000012347
5974771 - 5992444
17674