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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5977403_5977811_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5977403 - 5977811
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATCCAAACCT
Flanking Amino Acid:
KSMKLRSSRSETNRDRSNSP
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.3
34.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.7
0.8
0.7
84.4
30.5
Minor 5ss
34.5
-1.8
3.9
55
49.2
Minor BPS
49.7
0.06
2.2
77.78
44.2

Associated Gene:

Gene:
PTPN22
Ensembl Gene ID:
ENSAPLG00000011829
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017699
5975269 - 5992444
17176
ENSAPLT00000012347
5974771 - 5992444
17674