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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5977840_5978367_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5977840 - 5978367
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCAAATACTT
Flanking Amino Acid:
NDTVRLRPCKSMKLRSSRSE
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.3
34.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
34.4
-1.8
2.8
41.5
45.1
Minor BPS
43.2
-0.4
2.1
68.93
41.5

Associated Gene:

Gene:
PTPN22
Ensembl Gene ID:
ENSAPLG00000011829
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028662
5974771 - 5992444
17674
ENSAPLT00000017699
5975269 - 5992444
17176
ENSAPLT00000012347
5974771 - 5992444
17674