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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5978757_5979641_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5978757 - 5979641

Intron Length:

885

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTGAGTGCT

5'SS Class:

major

3'SS Sequence:

TTGTGCCATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGCAG

U12 Branch Point Sequence:

AGGTCTGTAGTT

Flanking Amino Acid:

HPSAGRTSPLSNLATSPQLD

Intron Amino Acid Position:

595

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

68.6

36.4

Major BPS

51.1

0.03

1.8

71.4

45.1

Major PPT

0.52

66.8

39.6

Minor 5ss

31.2

-2.2

3.2

38.1

40.6

Minor BPS

45.7

-0.2

2.1

62.5

42.4

Associated Gene:

Gene:

PTPN22

Ensembl Gene ID:

ENSAPLG00000011829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017699

5975269 - 5992444

17176

ENSAPLT00000012347

5974771 - 5992444

17674

ENSAPLT00000028662

5974771 - 5992444

17674