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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5981292_5982551_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5981292 - 5982551

Intron Length:

1260

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGGTC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTCACTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAC

U12 Branch Point Sequence:

TTTTCTTTCACT

Flanking Amino Acid:

DAQEDSAASQIQTRHPVPKP

Intron Amino Acid Position:

328

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

74.2

36.3

Major BPS

73.6

0.59

0.9

63.3

35.6

Major PPT

79.3

0.66

0.8

34.7

Minor 5ss

33.1

-1.9

3.8

49.2

47.3

Minor BPS

78.7

0.98

1.6

95.57

31.2

Associated Gene:

Gene:

PTPN22

Ensembl Gene ID:

ENSAPLG00000011829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028662

5974771 - 5992444

17674

ENSAPLT00000017699

5975269 - 5992444

17176

ENSAPLT00000012347

5974771 - 5992444

17674