Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5982645_5983220_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5982645 - 5983220

Intron Length:

576

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGCTCA

5'SS Class:

major

3'SS Sequence:

CTCCGTGATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TCTGTTTTATTT

Flanking Amino Acid:

TQRPSIVQTKEQYKLVYDAV

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

68.8

38.9

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

67.3

0.39

60.9

39.3

Minor 5ss

43.1

-0.8

47.2

Minor BPS

53.6

0.19

1.7

70.13

42.3

Associated Gene:

Gene:

PTPN22

Ensembl Gene ID:

ENSAPLG00000011829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017699

5975269 - 5992444

17176

ENSAPLT00000012347

5974771 - 5992444

17674

ENSAPLT00000028662

5974771 - 5992444

17674