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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5983299_5984178_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5983299 - 5984178

Intron Length:

880

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTAGGTGTC

5'SS Class:

major

3'SS Sequence:

CATTTCTTGCAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

CTGCCTTTAATT

Flanking Amino Acid:

DYTQKLLKDGIVPVNFSIFS

Intron Amino Acid Position:

271

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.2

0.41

1.1

66.6

38.9

Major BPS

100

1.24

0.5

100

Major PPT

0.32

1.2

41.6

Minor 5ss

37.1

-1.5

3.6

42.4

Minor BPS

69.3

0.68

1.3

76.76

40.6

Associated Gene:

Gene:

PTPN22

Ensembl Gene ID:

ENSAPLG00000011829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028662

5974771 - 5992444

17674

ENSAPLT00000017699

5975269 - 5992444

17176

ENSAPLT00000012347

5974771 - 5992444

17674