About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5984865_5985276_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5984865 - 5985276
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
GTTAATTCAGTC
Flanking Amino Acid:
IRTLKVTLNEETRTVHQFHY
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85.8
0.8
0.7
80.4
24.8
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
43.2
-0.5
1.8
53.32
38.2

Associated Gene:

Gene:
PTPN22
Ensembl Gene ID:
ENSAPLG00000011829
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028662
5974771 - 5992444
17674
ENSAPLT00000017699
5975269 - 5992444
17176
ENSAPLT00000012347
5974771 - 5992444
17674