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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5985337_5985423_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5985337 - 5985423

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTGAGTATA

5'SS Class:

major

3'SS Sequence:

TATTGTTCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

ATGACCCTAATT

Flanking Amino Acid:

LQCGPFSIACEAEEKKNEYV

Intron Amino Acid Position:

181

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.55

1.1

76.1

34.8

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

73.5

0.53

69.9

41.1

Minor 5ss

35.9

-1.6

2.9

43.1

43.9

Minor BPS

60.3

0.4

1.7

76.11

40.5

Associated Gene:

Gene:

PTPN22

Ensembl Gene ID:

ENSAPLG00000011829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028662

5974771 - 5992444

17674

ENSAPLT00000017699

5975269 - 5992444

17176

ENSAPLT00000012347

5974771 - 5992444

17674