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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5986501_5987394_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5986501 - 5987394
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGCTT
5'SS Class:
major
3'SS Sequence:
AATGCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CATATCTGATCT
Flanking Amino Acid:
SHYINANFIKGVYGPRAYIA
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
68
42.6
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
66.8
0.38
1
62.8
43.3
Minor 5ss
42.8
-0.8
3.4
65
46.3
Minor BPS
48.8
-0
1.8
66.49
43.8

Associated Gene:

Gene:
PTPN22
Ensembl Gene ID:
ENSAPLG00000011829
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012347
5974771 - 5992444
17674
ENSAPLT00000028662
5974771 - 5992444
17674
ENSAPLT00000017699
5975269 - 5992444
17176