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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5987472_5988289_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5987472 - 5988289

Intron Length:

818

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAGGTTGG

5'SS Class:

major

3'SS Sequence:

TTTGTGCCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTAAC

U12 Branch Point Sequence:

TTCTCCTGCTTT

Flanking Amino Acid:

KKNRYKDILPFDHSRVELSL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.9

0.3

1.2

53.9

45.7

Major BPS

64.5

0.36

65.2

28.2

Major PPT

80.4

0.68

0.9

36.8

Minor 5ss

41.1

-1

3.2

58.1

46.4

Minor BPS

40.7

-0.6

3.6

72.32

Associated Gene:

Gene:

PTPN22

Ensembl Gene ID:

ENSAPLG00000011829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012347

5974771 - 5992444

17674

ENSAPLT00000028662

5974771 - 5992444

17674

ENSAPLT00000017699

5975269 - 5992444

17176