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Intron Name: Anas_platyrhynchos_platyrhynchos_27_5988399_5992297_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5988399 - 5992297

Intron Length:

3899

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTATCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTCTAT

U12 Branch Point Sequence:

TCTGCTGTAACT

Flanking Amino Acid:

DQEAFVEEFLKLKRQSTKYR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.9

0.92

0.8

80.5

34.9

Major BPS

61.5

0.29

1.3

62.1

44.1

Major PPT

81.7

0.71

0.8

76.5

30.6

Minor 5ss

-0.7

2.8

55.1

43.4

Minor BPS

0.33

2.1

78.9

Associated Gene:

Gene:

PTPN22

Ensembl Gene ID:

ENSAPLG00000011829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028662

5974771 - 5992444

17674

ENSAPLT00000017699

5975269 - 5992444

17176

ENSAPLT00000012347

5974771 - 5992444

17674