Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5994954_5995374_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5994954 - 5995374

Intron Length:

421

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TGT|GCAGGAGGA

5'SS Class:

weak_major

3'SS Sequence:

GCAGATGGAGAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

GCCCTCTTGATG

Flanking Amino Acid:

PGTHEGQILCFGAAVDSLSR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.2

0.12

1.4

39.7

Major BPS

83.8

0.84

73.6

41.8

Major PPT

-0.3

1.2

39.5

Minor 5ss

20.1

-3.5

4.2

28.9

43.6

Minor BPS

49.7

-0.1

1.4

47.61

40.2

Associated Gene:

Gene:

BCL2L15

Ensembl Gene ID:

ENSAPLG00000011748

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012238

5994723 - 6001031

6309