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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5995405_5995793_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5995405 - 5995793
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACTCACA
5'SS Class:
weak_major
3'SS Sequence:
AGATAATCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
CAGTAGATAATC
Flanking Amino Acid:
ERVSSQALAEPGTHEGQILC
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.1
0.24
1.1
58.3
40.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
64.8
0.33
1
56
43.7
Minor 5ss
40.4
-1.1
3
49.7
40.7
Minor BPS
40.9
-0.7
2.3
49.11
41.2

Associated Gene:

Gene:
BCL2L15
Ensembl Gene ID:
ENSAPLG00000011748
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012238
5994723 - 6001031
6309