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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6005770_6006443_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6005770 - 6006443
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
ACTTCTTGACTC
Flanking Amino Acid:
NKPIAHHLLNRMADLDQWGQ
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.9
34.5
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
80
0.67
1
77.1
37.1
Minor 5ss
34.6
-1.7
3.1
44.1
43.8
Minor BPS
50.2
-0
1.7
60.93
39.1

Associated Gene:

Gene:
AP4B1
Ensembl Gene ID:
ENSAPLG00000011577
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012073
6000567 - 6007170
6604