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Intron Name: Anas_platyrhynchos_platyrhynchos_27_6010356_6010427_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6010356 - 6010427

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CGCCCGCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCGTCAC

U12 Branch Point Sequence:

GGCCCCGTCACG

Flanking Amino Acid:

TARLLHHRLQVPRCWIRPLE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

77.2

32.8

Major BPS

1.2

54.6

40.8

Major PPT

61.4

0.26

0.9

53.3

Minor 5ss

32.6

-2

3.4

44.1

43.8

Minor BPS

42.3

-0.7

2.4

46.14

Associated Gene:

Gene:

HIPK1

Ensembl Gene ID:

ENSAPLG00000011009

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034240

6010171 - 6043358

33188

ENSAPLT00000025333

6010171 - 6043358

33188