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Intron Name: Anas_platyrhynchos_platyrhynchos_27_6011658_6020156_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6011658 - 6020156

Intron Length:

8499

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGGGTTTG

5'SS Class:

major

3'SS Sequence:

TCTCCCTCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTAAT

U12 Branch Point Sequence:

GTAGGCCTAATG

Flanking Amino Acid:

QSPVSDEHVPSMASQLQVFS

Intron Amino Acid Position:

396

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

68.6

39.1

Major BPS

64.2

0.35

1.3

65.8

39.5

Major PPT

79.1

0.66

0.7

76.8

25.1

Minor 5ss

38.7

-1.3

3.2

48.4

42.2

Minor BPS

43.9

-0.6

2.1

49.51

44.4

Associated Gene:

Gene:

HIPK1

Ensembl Gene ID:

ENSAPLG00000011009

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034240

6010171 - 6043358

33188

ENSAPLT00000030057

6010171 - 6043358

33188

ENSAPLT00000025333

6010171 - 6043358

33188