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Intron Name: Anas_platyrhynchos_platyrhynchos_27_6013669_6020156_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6013669 - 6020156

Intron Length:

6488

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCTCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTAAT

U12 Branch Point Sequence:

GTAGGCCTAATG

Flanking Amino Acid:

DTGCTFVLLKRMASQLQVFS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

1.2

81.4

32.7

Major BPS

64.2

0.35

1.3

65.8

39.5

Major PPT

79.1

0.66

0.7

76.8

25.1

Minor 5ss

37.4

-1.4

2.7

Minor BPS

43.9

-0.6

2.1

49.51

44.4

Associated Gene:

Gene:

HIPK1

Ensembl Gene ID:

ENSAPLG00000011009

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011503

6013602 - 6043358

29757