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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6020861_6020998_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6020861 - 6020998
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
GATTTCTTAAAG
Flanking Amino Acid:
PSYARQGQIEQNKFSPLPLK
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
75.8
0.64
1
65.8
41
Major PPT
71.2
0.48
1.1
71.4
38.5
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
67
0.39
1.5
66.65
40.5

Associated Gene:

Gene:
HIPK1
Ensembl Gene ID:
ENSAPLG00000011009
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029783
6019746 - 6043358
23613