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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6028141_6030076_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6028141 - 6030076
Intron Length:
1936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTCTC
5'SS Class:
major
3'SS Sequence:
CTTTATTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTATATTAACA
Flanking Amino Acid:
NLGYPLWRLKTPEEHELETG
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
70
40.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
84.8
0.78
0.7
80.1
31.6
Minor 5ss
41.2
-1
2.7
53.6
43.5
Minor BPS
69.6
0.61
1.6
81.24
33.5

Associated Gene:

Gene:
HIPK1
Ensembl Gene ID:
ENSAPLG00000011009
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025333
6010171 - 6043358
33188
ENSAPLT00000011503
6013602 - 6043358
29757
ENSAPLT00000034240
6010171 - 6043358
33188
ENSAPLT00000030057
6010171 - 6043358
33188
ENSAPLT00000029783
6019746 - 6043358
23613