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Intron Name: Anas_platyrhynchos_platyrhynchos_27_6030164_6031018_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6030164 - 6031018

Intron Length:

855

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTTTCAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTTAA

U12 Branch Point Sequence:

GTTTGCTTAACT

Flanking Amino Acid:

IFNCLDDMAQVNMSTDLEGT

Intron Amino Acid Position:

493

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

75.8

35.3

Major BPS

67.1

0.42

1.1

57.7

41.3

Major PPT

80.3

0.68

79.2

38.4

Minor 5ss

35.7

-1.6

2.6

42.3

44.5

Minor BPS

78.3

0.97

1.7

92.9

35.6

Associated Gene:

Gene:

HIPK1

Ensembl Gene ID:

ENSAPLG00000011009

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025333

6010171 - 6043358

33188

ENSAPLT00000011503

6013602 - 6043358

29757

ENSAPLT00000034240

6010171 - 6043358

33188

ENSAPLT00000030057

6010171 - 6043358

33188

ENSAPLT00000029783

6019746 - 6043358

23613