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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6031204_6031453_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6031204 - 6031453
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TCTTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTACATATCT
Flanking Amino Acid:
THLLDFPHSNHVKSCFQNME
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
86.1
0.81
0.8
84.1
30.8
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
58.9
0.36
2.1
86.36
39.1

Associated Gene:

Gene:
HIPK1
Ensembl Gene ID:
ENSAPLG00000011009
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030057
6010171 - 6043358
33188
ENSAPLT00000029783
6019746 - 6043358
23613
ENSAPLT00000025333
6010171 - 6043358
33188
ENSAPLT00000011503
6013602 - 6043358
29757
ENSAPLT00000034240
6010171 - 6043358
33188