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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6031617_6031932_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6031617 - 6031932
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AAATCTGTAATA
Flanking Amino Acid:
NNQLNTVHNQASVLASNSTA
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
70.7
33.2
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
30.8
-2.2
3.3
40
45.5
Minor BPS
52.8
0.09
2
63.55
36.9

Associated Gene:

Gene:
HIPK1
Ensembl Gene ID:
ENSAPLG00000011009
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029783
6019746 - 6043358
23613
ENSAPLT00000025333
6010171 - 6043358
33188
ENSAPLT00000011503
6013602 - 6043358
29757
ENSAPLT00000034240
6010171 - 6043358
33188
ENSAPLT00000030057
6010171 - 6043358
33188