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Intron Name: Anas_platyrhynchos_platyrhynchos_27_6032156_6033036_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6032156 - 6033036

Intron Length:

881

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTCCCATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTAAAA

U12 Branch Point Sequence:

TTTAGTTTAGCT

Flanking Amino Acid:

TFIVCPPAFQTGLQATTKHS

Intron Amino Acid Position:

683

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

77.8

33.2

Major BPS

64.3

0.36

71.3

30.3

Major PPT

74.1

0.54

0.8

69.1

31.6

Minor 5ss

41.3

-1

2.8

49.5

41.2

Minor BPS

56.2

0.27

80.46

41.6

Associated Gene:

Gene:

HIPK1

Ensembl Gene ID:

ENSAPLG00000011009

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029783

6019746 - 6043358

23613

ENSAPLT00000025333

6010171 - 6043358

33188

ENSAPLT00000011503

6013602 - 6043358

29757

ENSAPLT00000034240

6010171 - 6043358

33188

ENSAPLT00000030057

6010171 - 6043358

33188