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Intron Name: Anas_platyrhynchos_platyrhynchos_27_6033159_6034681_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6033159 - 6034681

Intron Length:

1523

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATAAA

5'SS Class:

strong_major

3'SS Sequence:

ATCTACATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTACAT

U12 Branch Point Sequence:

GTTTGTTTCACT

Flanking Amino Acid:

LQIQSGVLTQGSCTPLMVAT

Intron Amino Acid Position:

724

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.8

85.6

24.6

Major BPS

70.2

0.5

1.1

77.2

Major PPT

75.2

0.57

0.9

70.9

38.8

Minor 5ss

34.4

-1.8

2.8

41.8

44.8

Minor BPS

56.3

0.28

2.2

80.14

42.2

Associated Gene:

Gene:

HIPK1

Ensembl Gene ID:

ENSAPLG00000011009

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025333

6010171 - 6043358

33188

ENSAPLT00000011503

6013602 - 6043358

29757

ENSAPLT00000030057

6010171 - 6043358

33188

ENSAPLT00000029783

6019746 - 6043358

23613