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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6033159_6037346_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6033159 - 6037346
Intron Length:
4188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAG
U12 Branch Point Sequence:
GATCTAGTAAGC
Flanking Amino Acid:
LQIQSGVLTQQAWPGGTQQI
Intron Amino Acid Position:
1097

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
52.7
0.07
1.6
61.7
43.1
Major PPT
82
0.72
0.9
76.2
37.8
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
40.1
-0.7
2.3
50.61
39.6

Associated Gene:

Gene:
HIPK1
Ensembl Gene ID:
ENSAPLG00000011009
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034240
6010171 - 6043358
33188