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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6034817_6037346_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6034817 - 6037346
Intron Length:
2530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTGCC
5'SS Class:
major
3'SS Sequence:
TGCTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAG
U12 Branch Point Sequence:
GATCTAGTAAGC
Flanking Amino Acid:
ALVEQTAAVLQAWPGGTQQI
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
67.8
35.6
Major BPS
52.7
0.07
1.6
61.7
43.1
Major PPT
82
0.72
0.9
76.2
37.8
Minor 5ss
34.2
-1.8
3.1
42
38.9
Minor BPS
40.1
-0.7
2.3
50.61
39.6

Associated Gene:

Gene:
HIPK1
Ensembl Gene ID:
ENSAPLG00000011009
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025333
6010171 - 6043358
33188
ENSAPLT00000011503
6013602 - 6043358
29757
ENSAPLT00000030057
6010171 - 6043358
33188
ENSAPLT00000029783
6019746 - 6043358
23613