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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6037490_6037665_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6037490 - 6037665
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TTTTCTTTGCCT
Flanking Amino Acid:
IGGGQQLADWRNAHSHGNQY
Intron Amino Acid Position:
816

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
82.5
37
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
81.6
0.71
0.8
80.5
31.5
Minor 5ss
36.8
-1.5
3.6
56.4
48
Minor BPS
53.3
0.19
3.5
90.81
33.2

Associated Gene:

Gene:
HIPK1
Ensembl Gene ID:
ENSAPLG00000011009
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029783
6019746 - 6043358
23613
ENSAPLT00000025333
6010171 - 6043358
33188
ENSAPLT00000011503
6013602 - 6043358
29757
ENSAPLT00000034240
6010171 - 6043358
33188
ENSAPLT00000030057
6010171 - 6043358
33188