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Intron Name: Anas_platyrhynchos_platyrhynchos_27_6037849_6038413_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6037849 - 6038413

Intron Length:

565

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGGATT

5'SS Class:

strong_major

3'SS Sequence:

GGTTTTCCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAT

U12 Branch Point Sequence:

GAATACTGATTT

Flanking Amino Acid:

KNKQPAPSAAKPSTTLETVP

Intron Amino Acid Position:

877

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

85.3

31.4

Major BPS

83.5

0.83

0.8

71.6

36.4

Major PPT

77.1

0.61

0.8

74.6

36.4

Minor 5ss

39.9

-1.1

3.4

40.7

Minor BPS

46.3

-0.2

1.8

61.36

41.8

Associated Gene:

Gene:

HIPK1

Ensembl Gene ID:

ENSAPLG00000011009

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025333

6010171 - 6043358

33188

ENSAPLT00000011503

6013602 - 6043358

29757

ENSAPLT00000034240

6010171 - 6043358

33188

ENSAPLT00000030057

6010171 - 6043358

33188

ENSAPLT00000029783

6019746 - 6043358

23613