About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6038630_6038875_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6038630 - 6038875
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
EEEDSKYKPASLGMKQRSNV
Intron Amino Acid Position:
949

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.8
0.76
0.7
77.9
23.9
Minor 5ss
33.8
-1.8
3.3
49
46.8
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
HIPK1
Ensembl Gene ID:
ENSAPLG00000011009
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025333
6010171 - 6043358
33188
ENSAPLT00000011503
6013602 - 6043358
29757
ENSAPLT00000034240
6010171 - 6043358
33188
ENSAPLT00000030057
6010171 - 6043358
33188
ENSAPLT00000029783
6019746 - 6043358
23613