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Intron Name: Anas_platyrhynchos_platyrhynchos_27_6039115_6039498_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6039115 - 6039498

Intron Length:

384

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTATG

5'SS Class:

strong_major

3'SS Sequence:

TGAAATCTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

AGCTTTTGAAAT

Flanking Amino Acid:

NDCIVATQSSGILSGTSKTK

Intron Amino Acid Position:

1029

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.5

1.12

0.7

90.9

28.7

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

71.3

0.48

66.4

44.5

Minor 5ss

39.3

-1.2

2.8

50.6

45.9

Minor BPS

50.5

0.09

1.5

64.78

39.6

Associated Gene:

Gene:

HIPK1

Ensembl Gene ID:

ENSAPLG00000011009

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025333

6010171 - 6043358

33188

ENSAPLT00000011503

6013602 - 6043358

29757

ENSAPLT00000034240

6010171 - 6043358

33188

ENSAPLT00000030057

6010171 - 6043358

33188

ENSAPLT00000029783

6019746 - 6043358

23613